nanoscale-system
|
container |
This is a nanoscale system. It can be used as is in any of
your XML or JSON files. It is also convenient as debugging to
represent the data tree. |
components
|
container |
This containers stores the list of components that are part
of the system. |
component
|
list |
A list of 1906.1 compatible objects in any nanoscale model. |
description
|
leaf |
An optional string to describe what does this component in
the non 1906.1 model.
For example, a neuron model reusing 1906.1 framework could
specify what this 'axon' is supposed to do in its
corresponding model. |
field-metrics
|
container |
The parent component must have a leaf of type 'field'
in order to be eligible to use this container. |
diffusive-flux
|
container |
Fick’s First Law is one of the standard laws of diffusion. |
D
|
leaf |
The diffusion coefficient or mass diffusivity in dimensions of length^2 time^−1, for example (m^2/s). |
J
|
leaf |
The diffusion flux, which is the amount of substance per unit area per unit time, for example (mol/m^2 × s); it measures the amount of substance that will flow through a small area during a small time interval. |
phi
|
leaf |
For ideal mixtures, this is the concentration in dimensions of amount of substance per unit volume, for example (mol m^-3). |
x
|
leaf |
The position (length), for example, in meters. |
langevin-noise
|
container |
Random motion has a significant impact upon the performance of Message Carriers,
in particle form, to reach their target receivers. |
eta
|
leaf |
The random component of force (motion component). The unit is a Newton. |
lambda
|
leaf |
The systematic part of the molecular force (field component). The unit is momentum. |
m
|
leaf |
The mass of the message carrier. |
t
|
leaf |
The current time. |
x
|
leaf |
The position of a message carrier. |
persistence-length
|
container |
Persistence Length is a measure of the degree to which a chain-like structure
is either soft (like strings of cooked spaghetti) or rigid (like metal rods). |
u-0
|
container |
Unit tangent vector at the origin or beginning of the chain of connected segments |
nabla
|
container |
A generic container representing the Cartesian coordinate for
this nabla. Ordering is very important, and providing at least
one element is mandatory.
Physicists will often refer to an operator with three coordinates.
Convention on the dimensions, unl... |
coordinate
|
leaf-list |
Cartesian coordinates for this nabla operator. It can be named. |
unit-tangent-vectors
|
list |
segment-index s u-s |
s
|
leaf |
The position of a unit tangent sample. |
segment-index
|
leaf |
A segment index. |
u-s
|
container |
The unit tangent vector at point s in set of connected segments. |
nabla
|
container |
A generic container representing the Cartesian coordinate for
this nabla. Ordering is very important, and providing at least
one element is mandatory.
Physicists will often refer to an operator with three coordinates.
Convention on the dimensions, unl... |
coordinate
|
leaf-list |
Cartesian coordinates for this nabla operator. It can be named. |
zeta-p
|
leaf |
The persistence length. |
human-designed
|
leaf |
'Human-designed' means a system that occurs as a result of
conscious human intervention. For clarity, human-designed
systems may include naturally occurring components in an
arrangement or for a purpose that is not otherwise
naturally occurring. |
identifier
|
leaf |
A unique identifier for this component to be associated to
the non 1906.1 model.
For example, a neuron axon can be comprised of multiple
sections. Each of the section should be uniquely identified
by the underlying model to store statistics or retrieve
c... |
motion-metrics
|
container |
The parent component must have a leaf of type 'motion'
in order to be eligible to use this container. |
collision-behavior
|
container |
Collision Behavior measures the physical result of collision between
Message Carriers. |
coefficient-of-restitution
|
leaf |
A measure of the 'restitution' of a collision between two objects: how much
of the kinetic energy remains for the objects to rebound from one another vs.
how much is lost as heat, or work done deforming the objects. The coefficient
is defined as the ratio... |
speed-after-collision
|
leaf |
The speed of a message carrier loaded with message after collision. |
speed-before-collision
|
leaf |
The speed of a message carrier loaded with message before collision. |
mass-displacement
|
container |
Molecular communication can assume Message Carriers are
composed of mass and move from one location to another. |
M
|
leaf |
Number of samples |
mass-displacement
|
leaf |
Value of the mass displacement. |
T
|
leaf |
Sample period (the time between each sample). |
tau
|
leaf |
Sample time |
x
|
leaf |
Mass at time t. |
positioning-accuracy-of-message-carriers
|
container |
Multiple swarms of message carriers can be controlled like unified organisms
to swim along predetermined paths toward the receiver by an external macro-unit
(e.g., an agglomeration of flagellated magnetotactic bacteria can be utilized as
efficient carrier... |
accuracy-percent
|
leaf |
Then number of message carriers located within the given area or volume. |
position
|
leaf |
The location of the center of mass of the message carriers. |
radius
|
leaf |
OID: /nanoscale-system/components/component/motion-metrics/positioning-accuracy-of-message-carriers/radius |
name
|
leaf |
An optional name to describe what is this component in the
non 1906.1 model.
For example, a neuron model reusing 1906.1 framework could
use 'axon' as a name for one of its components. |
next-component
|
leaf-list |
Identifies the list of sibling components attached to this
component in a unidirectional way. There can be 0 or more
next components and next components can be of any type.
This leaf-list helps identify the components along the
data path of a message, an... |
next-definition
|
leaf-list |
Identifies the list of sibling definitions attached to this
definition in a unidirectional way. There can be 0 or more
next definitions and next definition can be of any type.
This leaf-list helps identify the components along the
data path of a message,... |
properties
|
container |
This containers stores the list of optional properties that
provide extra definition of the component, or make this
component attribute supersedes corresponding system (or
parent component) corresponding attribute. |
amount-of-substance
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe amount of substance for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this prope... |
derived-unit
|
leaf-list |
Gives users options to annotate this specific SI derived unit,
thus declaring to the system which SI unit is used the said
derived unit for this component and its child nodes (e.g. for
this XML element and its children).
All derived units will depend on ... |
duration
|
leaf |
It is simply another way of naming time. If time is
already defined as property with its si unit annotated,
then it must be treated as an error if this leaf is also
present as property. |
electric-current
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe electric current for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property... |
length
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe length for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property. If for
i... |
luminous-intensity
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe luminous intensity for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this proper... |
mass
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe mass for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If omitte... |
scale
|
leaf |
Defines a generic scale for this system. If omitted, it is
understood that it is a nanoscale system (<1um). |
thermodynamic-temperature
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe temperature for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If... |
time
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe time for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If omitte... |
timestamp
|
leaf |
Gives a timestamp for a snapshot of the system, relating
metrics to a reference in simulation time. |
specificity-metrics
|
container |
The parent component must have a leaf of type 'specificity'
in order to be eligible to use this container. |
affinity
|
leaf |
Affinity is a standard measure of chemical affinity; however it is applied to the broader
IEEE 1906 framework and the affinity of Message Carriers to their intended targets, Media,
and other Message Carriers. |
angular-spectrum
|
container |
Angular Spectrum quantifies the distribution of the intensity of nanoscale
communication signals received at the receiver as a function of angle-of-arrival. |
density-function
|
list |
A list of probabilities forming a probability density function. |
probability-sample
|
leaf |
A sample probability in the probability density. |
delay-spectrum
|
container |
Delay Spectrum quantifies the distribution of the intensity of nanoscale
communication signals received at the receiver as a function of time-of-arrival. |
density-function
|
list |
A list of probabilities forming a probability density function. |
probability-sample
|
leaf |
A sample probability in the probability density. |
sensitivity
|
leaf |
A measure of the proportion of true positives, which are events that actually occurred
and have been correctly detected. See also: specificity. |
specificity
|
leaf |
A measure of precision in matching between components. See also: sensitivity. |
sub-component
|
leaf-list |
Identifies the list of child components that are part of
this component. There can be 0 or more child components
and child components can be of any type.
For example, a nanoscale interface can be comprised of a
transmitter and a receiver sub-components, ... |
sub-definition
|
leaf-list |
Identifies the list of child definitions that are part of
this definition. There can be 0 or more child definition
and child definition can be of any type. |
type-of-component
|
leaf |
Identifies this component from the non 1906.1 model to a
1906.1 compatible component.
For example, a neurotransmitter can be considered a 'message-carrier'.
This leaf automatically selects the correct type of metric to display.
See the following list of... |
contact
|
leaf-list |
List of contact names. It is recommended to append the
email address of the contact as well. |
definitions
|
container |
This containers stores the list of definitions that are part
of the system. |
definition
|
list |
A list of IEEE 1906.1-2015 compatible objects. |
description
|
leaf |
An optional string to describe what does this definition in
the non 1906.1 model. |
human-designed
|
leaf |
'Human-designed' means a system that occurs as a result of
conscious human intervention. For clarity, human-designed
systems may include naturally occurring components in an
arrangement or for a purpose that is not otherwise
naturally occurring. |
identifier
|
leaf |
A unique identifier for this definition to be associated to
the non 1906.1 model. |
message-metrics
|
container |
The parent definition must have a leaf of type 'message'
in order to be eligible to use this container. |
bandwidth-delay-product
|
container |
Bandwidth-Delay Product is proportional to the maximum number of Message Carriers capable of fitting within the physical channel. |
channel-bandwidth
|
leaf |
The bits per second transported by the nanoscale communication channel. |
channel-delay
|
leaf |
The time for a message to propagate from one end of a channel to the other. |
information-and-communication-energy
|
container |
This is the metric that quantifies energy used in nanoscale communication.
This is energy per bit of information conveyed by the Motion Component. |
energy-message-delivery
|
leaf |
The energy used to transport a message across a channel. |
information-message-delivery
|
leaf |
The amount of information in a message. |
information-density
|
container |
surface amount-of-information |
amount-of-information
|
leaf |
Amount of information. |
surface
|
container |
A surface. |
scalar
|
leaf-list |
A scalar representing this surface in the considered space. |
message-deliverability
|
leaf |
Message Deliverability measures whether a Message Carrier
survives long enough to deliver its information to the
intended receiver.
Message Deliverability (MD) assumes messages have a finite
time-to-live (TTL). Thus, MD = P(tr < TTL) where tr is the
age ... |
message-lifetime
|
leaf |
Message Lifetime measures the lifetime of a Message
Carrier. TTL is used in 6.1. |
name
|
leaf |
An optional name to describe what is this definition in the
non 1906.1 model. |
next-component
|
leaf-list |
Identifies the list of next components that are interfaced
to this definition. There can be 0 or more next components
and next components can be of any type. However, model
shall clearly identify next components that make valid
interfaces from Std. IEEE 1... |
next-definition
|
leaf-list |
Identifies the list of sibling definitions attached to this
definition in a unidirectional way. There can be 0 or more
next definitions and next definition can be of any type.
This leaf-list helps identify the components along the
data path of a message,... |
properties
|
container |
This containers stores the list of optional properties that
provide extra definition of the component, or make this
component attribute supersedes corresponding system (or
parent component) corresponding attribute. |
amount-of-substance
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe amount of substance for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this prope... |
derived-unit
|
leaf-list |
Gives users options to annotate this specific SI derived unit,
thus declaring to the system which SI unit is used the said
derived unit for this component and its child nodes (e.g. for
this XML element and its children).
All derived units will depend on ... |
duration
|
leaf |
It is simply another way of naming time. If time is
already defined as property with its si unit annotated,
then it must be treated as an error if this leaf is also
present as property. |
electric-current
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe electric current for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property... |
length
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe length for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property. If for
i... |
luminous-intensity
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe luminous intensity for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this proper... |
mass
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe mass for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If omitte... |
scale
|
leaf |
Defines a generic scale for this system. If omitted, it is
understood that it is a nanoscale system (<1um). |
thermodynamic-temperature
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe temperature for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If... |
time
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe time for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If omitte... |
timestamp
|
leaf |
Gives a timestamp for a snapshot of the system, relating
metrics to a reference in simulation time. |
sub-component
|
leaf-list |
Identifies the list of child components that are part of
this definition. There can be 0 or more child components
and child components can be of any type. |
sub-definition
|
leaf-list |
Identifies the list of child definitions that are part of
this definition. There can be 0 or more child definition
and child definition can be of any type. |
type-of-definition
|
leaf |
Identifies the IEEE 1906.1-2015 definition extended in this model. |
description
|
leaf |
An optional leaf describing what this nanoscale is expected
to do. |
human-designed
|
leaf |
'Human-designed' means a system that occurs as a result of
conscious human intervention. For clarity, human-designed
systems may include naturally occurring components in an
arrangement or for a purpose that is not otherwise
naturally occurring. |
identifier
|
leaf |
Identifying the system to make it a resource available
online. |
license
|
leaf |
The name of the license controlling rights to this document |
organization
|
leaf-list |
The name of the vendor or the authority providing standards. |
properties
|
container |
This containers stores the list of optional properties that
provide extra definition of the system. |
amount-of-substance
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe amount of substance for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this prope... |
derived-unit
|
leaf-list |
Gives users options to annotate this specific SI derived unit,
thus declaring to the system which SI unit is used the said
derived unit for this component and its child nodes (e.g. for
this XML element and its children).
All derived units will depend on ... |
duration
|
leaf |
It is simply another way of naming time. If time is
already defined as property with its si unit annotated,
then it must be treated as an error if this leaf is also
present as property. |
electric-current
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe electric current for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property... |
length
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe length for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property. If for
i... |
luminous-intensity
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe luminous intensity for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this proper... |
mass
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe mass for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If omitte... |
scale
|
leaf |
Defines a generic scale for this system. If omitted, it is
understood that it is a nanoscale system (<1um). |
thermodynamic-temperature
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe temperature for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If... |
time
|
leaf |
Gives users options to annotate this leaf, thus declaring to
the system which SI unit is used to describe time for this
component and its child nodes (e.g. for this XML element and
its children).
All derived units will depend on this property.
If omitte... |
timestamp
|
leaf |
Gives a timestamp for a snapshot of the system, relating
metrics to a reference in simulation time. |
system-metrics
|
container |
Metrics that can be used by nanoscale systems only. |
active-network-programmability
|
container |
Message Carriers can be programmed or coded such they change the
underlying Media (e.g., microtubules, nanotubes, etc.) as they
transport information (see 5.3.4). |
delta-f
|
leaf |
The change in f(t) intentionally caused by a
programmed Message Carrier through a surface. |
f
|
leaf |
The flux of Message Carriers as a function of time where flux
is the rate of flow through a unit area. |
S
|
container |
math-formula |
math-formula
|
container |
expression package version |
expression
|
leaf |
A mathematical expression. |
package
|
leaf |
The math package that reads the expression in its native format. |
version
|
leaf |
The version of the math package assumed. |
t
|
leaf |
The current time. |
bandwidth-volume-ratio
|
container |
The Bandwidth-Volume Ratio takes into account and combines two
fundamental essences of molecular and nanoscale communication,
namely its size and bandwidth. |
bandwidth
|
leaf |
The bandwidth of the nanoscale communication channel. |
volume
|
leaf |
The sum of the volume of the transmitter and receiver
pair for a communication system. |
perturbation-rate
|
container |
Perturbation Rate is a measure of both the rate and control of any
type of perturbation used to send a signal in the system. |
error-of-perturbation
|
leaf |
Rate of error in the componet representing bits of information
in the channel. There is typically a tradeoff with rate-of-perturbation |
rate-of-perturbation
|
leaf |
Rate of change of the componet representing bits of information
in the channel. There is typically a tradeoff with error-of-perturbation. |
supersystem-degradation
|
container |
The supersystem is the system in which the IEEE 1906.1 network resides.
This can be a biological organism. This metric quantifies the impact of
the network upon the supersystem with regard to its normal operation. |
ds
|
leaf |
The supersystem degradation of the performance-attribute. |
performance-attribute
|
leaf |
A descriptive name of the performance attribute. |
sp
|
leaf |
The native supersystem performance (without the embedded nanoscale
communication network). |
spn
|
leaf |
The supersystem performance of the performance-attribute with
the embedded nanoscale communication network. |
system-type
|
leaf |
Define the system type being described. Defaults to
nanoscale-communication.
Communication is the act of conveying a message from a
transmitting party to a receiving party. This includes the
components of message, transmitter, receiver, medium, and
m... |
title
|
leaf |
A short, optional title for this nanoscale system. Can be
the name of the product. |
version
|
leaf |
The version number of this document. No pattern control for
this leaf is defined. User may use simple numbering or
provide a date and time, or a mix of them. |